New
selected normalisation papers:
RefGenes: identification of reliable and
condition specific reference genes for RT-qPCR data normalization.
Hruz T, Wyss M, Docquier M, Pfaffl MW, Masanetz S, Borghi L, Verbrugghe
P, Kalaydjieva L, Bleuler S, Laule O, Descombes P, Gruissem W,
Zimmermann P.
BMC Genomics. 2011 Mar 21;12(1):156.
Identification of suitable reference genes
for normalization of qPCR data in comparative transcriptomics analyses
in the Triticeae
Marıa J. Gimenez, Fernando Piston, Sergio G. Atienza
Planta. 2011 233(1):163-73.
Evaluation of suitable reference genes for
normalization of real-time reverse transcription PCR analysis in colon
cancer
Lise Aa Sorby, Solveig N Andersen, Ida RK Bukholm, Morten B Jacobsen
Journal of Experimental & Clinical Cancer Research 2010, 29:144
Tissue-specific disallowance of
housekeeping genes: The other face of cell differentiation
Lieven Thorrez, Ilaria Laudadio, Katrijn Van Deun, Roel Quintens, Nico
Hendrickx, Mikaela Granvik, Katleen Lemaire, Anica Schraenen, Leentje
Van Lommel, Stefan Lehnert, Cristina Aguayo-Mazzucato, Rui Cheng-Xue,
Patrick Gilon, Iven Van Mechelen, Susan Bonner-Weir,
Fre´de´ric Lemaigre, and Frans Schuit
Genome Research 2011 21:95–105
Robust RT-qPCR Data Normalization:
Validation and Selection of Internal Reference Genes during
Post-Experimental Data Analysis
Daijun Ling, Paul M. Salvaterra
PLoS ONE 2011 6(3): e17762.
Identification of genes for normalization
of quantitative real-time PCR data in ovarian tissues
Jie Fu, Lihong Bian, Li Zhao, Zhouhuan Dong, Xin Gao, Haofei Luan,
Yunjuan Sun, and Haifeng Song
Acta Biochim Biophys Sin (2010): 1–7
A pipeline to determine RT-QPCR control
genes for evolutionary studies: application to primate gene expression
across multiple tissues.
Fedrigo O, Warner LR, Pfefferle AD, Babbitt CC, Cruz-Gordillo P, Wray
GA.
PLoS One. 2010 5(9). pii: e12545.
Selection of reference genes for
quantitative polymerase chain reaction studies in purified B cells from
B cell chronic lymphocytic leukaemia patients.
Valceckiene V, Kontenyte R, Jakubauskas A, Griskevicius L.
Br J Haematol. 2010 Nov;151(3):232-8.
Validation of rat reference genes for
improved quantitative gene expression analysis using low density arrays
Jenny Hong Cai, Shibing Deng, Steven W. Kumpf, Patricia A. Lee,
Panayiotis Zagouras, Anne Ryan, and Dan S. Gallagher
BioTechniques 2010 42:503-512
Identification of suitable internal control
genes for expression studies in Coffea arabica under different
experimental conditions.
Barsalobres-Cavallari CF, Severino FE, Maluf MP, Maia IG.
BMC Mol Biol. 2009 Jan 6;10:1
Selection of reliable reference genes for
gene expression studies in peach using real-time PCR
Zhaoguo Tong, Zhihong Gao, Fei Wang, Jun Zhou and Zhen Zhang
BMC Molecular Biology 2009, 10:71
Evaluation of reference genes for studies
of gene expression in the bovine liver, kidney, pituitary, and thyroid
Pawe Lisowski, Mariusz Pierzcha, Joanna Gooecik, Chandra S. Pareek,
Lech Zwierzchowski
J Appl Genet 49(4), 2008, pp. 367–37
Data-driven normalization strategies for
high-throughput quantitative RT-PCR
Jessica C Mar, Yasumasa Kimura, Kate Schroder, Katharine M Irvine,
Yoshihide Hayashizaki, Harukazu Suzuki, David Hume and John Quackenbush
BMC Bioinformatics 2009, 10:110
An abundance of ubiquitously
expressed genes revealed by tissue transcriptome sequence data.
Ramsköld D, Wang ET, Burge CB, Sandberg R.
PLoS Comput Biol. 2009 5(12):e1000598
'Desperate
house genes': the dramatic example of hypoxia.
Caradec J, Sirab N, Keumeugni C, Moutereau S, Chimingqi M, Matar C,
Revaud D, Bah M, Manivet P, Conti M, Loric S.
Br J Cancer. 2010 Mar 16;102(6):1037-43. Epub 2010 Feb 23.
Reference gene alternatives to
Gapdh in rodent and human heart failure gene expression studies.
Brattelid T, Winer LH, Levy FO, Liestøl K, Sejersted OM,
Andersson KB.
BMC Mol Biol. 2010 Mar 23;11:22.
Genomic
selection of reference genes for real-time PCR in human myocardium.
Pilbrow AP, Ellmers LJ, Black MA, Moravec CS, Sweet WE, Troughton RW,
Richards AM, Frampton CM, Cameron VA.
BMC Med Genomics. 2008 Dec 29;1:64.
Selection of internal control
genes for quantitative real-time RT-PCR studies during tomato
development process.
Expósito-Rodríguez M, Borges AA, Borges-Pérez A,
Pérez JA.
BMC Plant Biol. 2008 Dec 22;8:131.
Validation of putative reference genes for
gene expression studies in human hepatocellular carcinoma using
real-time quantitative RT-PCR.
Cicinnati VR, Shen Q, Sotiropoulos GC, Radtke A, Gerken G, Beckebaum S.
BMC Cancer. 2008 8:350.
Characterization
of housekeeping genes in zebrafish: male-female differences and effects
of tissue type, developmental stage and chemical treatment.
McCurley AT, Callard GV.
BMC Mol Biol. 2008 9:102.
Optimisation of region-specific reference
gene selection and relative gene expression analysis methods for
pre-clinical trials of Huntington's disease.
Benn CL, Fox H, Bates GP.
Mol Neurodegener. 2008 3:17.
The lack of a systematic validation of
reference genes: a serious pitfall undervalued in reverse
transcription-polymerase chain reaction (RT-PCR) analysis in plants.
Gutierrez L, Mauriat M, Guénin S, Pelloux J, Lefebvre JF, Louvet
R, Rusterucci C, Moritz T, Guerineau F, Bellini C, Van Wuytswinkel O.
Plant Biotechnol J. 2008 6(6):609-18
Normalization of qRT-PCR data: the
necessity of adopting a systematic, experimental conditions-specific,
validation of references.
Guénin S, Mauriat M, Pelloux J, Van Wuytswinkel O, Bellini C,
Gutierrez L.
J Exp Bot. 2009 60(2):487-93. Review
Selection of optimal reference
genes for normalization in quantitative RT-PCR.
Chervoneva I, Li Y, Schulz S, Croker S, Wilson C, Waldman SA, Hyslop T.
BMC Bioinformatics. 2010 11:253.
Validation of the comparative
quantification method of real-time PCR analysis and a cautionary tale
of housekeeping gene selection
Richard D. McCurdy, John J. McGrath, Alan Mackay-Sim
Gene Ther Mol Biol Vol 12, 15-24, 2008
Gene expression results in
lipopolysaccharide-stimulated monocytes depend significantly on the
choice of reference genes.
Piehler AP, Grimholt RM, Ovstebø R, Berg JP.
BMC Immunol. 2010 11:21.
Selection of housekeeping
genes for use in quantitative reverse transcription PCR assays on the
murine cornea.
Shengwei Ren, Feng Zhang, Changyou Li, Changkai Jia, Siyuan Li, Haijie
Xi, Hongbo Zhang, Lingling Yang, Yiqiang Wang
Molecular Vision 2010; 16:1076-1086
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